signaturescience. See also theR-universe documentation.Package: focustools 0.2.0
VP Nagraj
focustools: Forecasting COVID-19 in the United States (FOCUS) tools
Miscellaneous functions for retrieving data, creating and evaluating time series forecasting models for COVID-19 cases and deaths in the United States. Built for participation in the COVID-19 Forecast Hub.
Authors:
focustools_0.2.0.tar.gz
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focustools.pdf |focustools.html✨
focustools/json (API)
NEWS
| # Install 'focustools' in R: |
| install.packages('focustools', repos = c('https://stephenturner.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/signaturescience/focustools/issues
Last updated 2 years agofrom:eb0fb54bc2. Checks:ERROR: 1 WARNING: 6. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | FAIL | Nov 12 2024 |
| R-4.5-win | WARNING | Nov 12 2024 |
| R-4.5-linux | WARNING | Nov 12 2024 |
| R-4.4-win | WARNING | Nov 12 2024 |
| R-4.4-mac | WARNING | Nov 12 2024 |
| R-4.3-win | WARNING | Nov 12 2024 |
| R-4.3-mac | WARNING | Nov 12 2024 |
Exports:%>%extract_arima_paramsfocus_explorerformat_for_submissionget_casesget_deathsis_mondaymake_tsibbleplot_forecastsubmission_summarythis_mondayts_fitts_forecastts_futurecasesvalidate_forecast
Dependencies:anytimeaskpassbase64encBHbitbit64bslibcachemclicliprcolorspacecommonmarkcpp11crayoncurldigestdistributionaldplyrellipsisfablefabletoolsfansifarverfastmapfeastsfontawesomefsgenericsggdistggplot2gluegtableherehmshtmltoolshttpuvhttrisobandjquerylibjsonlitelabelinglaterlatticelifecyclelubridatemagrittrMASSMatrixmemoisemgcvmimeMMWRweekmunsellnlmenumDerivopensslpillarpkgconfigpngprettyunitsprogressprogressrpromisespurrrquadprogR6rappdirsRColorBrewerRcppRcppTOMLreadrreticulaterlangrprojrootsassscalesshinyslidersourcetoolsstringistringrsystibbletidyrtidyselecttimechangetsibbletzdburcautf8vctrsviridisLitevroomwarpwithrxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Extract ARIMA parameters | extract_arima_params |
| Function to launch FOCUS Explorer shiny app | focus_explorer |
| 'focustools' package | focustools |
| Format forecast for COVID-19 Forecast Hub submission entry | format_for_submission |
| Check Monday | is_monday |
| Make 'tsibble' | make_tsibble |
| Visualize forecast output | plot_forecast |
| Retrieve data | get_cases get_deaths retrieve |
| Reshape data for submission summary | spread_value |
| Summarize submission | submission_summary |
| Get Monday | this_monday |
| Helper used in 'ts_forecast()' to get cumulative forecast from incident | ts_cumulative_forecast |
| Wrapper to fit time series models | ts_fit |
| Generate time series forecasts including quantile estimates | ts_forecast |
| Helper to generate the estimate of incident cases from an icases forecast object | ts_futurecases |
| Check for valid quantile csv file input | validate_forecast |
