This package is hidden from search results because it is not hosted in the universe of the upstream ownersignaturescience. To fix this you can add URL: https://stephenturner.r-universe.dev/fiphde to the package DESCRIPTION file. See also theR-universe documentation.

Package: fiphde 2.1.0

VP Nagraj

fiphde: Forecasting Influenza in Support of Public Health Decision Making

Miscellaneous functions for retrieving data, creating and evaluating time series forecasting models for influenza-like illness (ILI) and influenza hospitalizations in the United States.

Authors:VP Nagraj [aut, cre], Desiree Williams [aut], Shakeel Jessa [aut], Chris Hulme-Lowe [aut], Stephen Turner [aut]

fiphde_2.1.0.tar.gz
fiphde_2.1.0.zip(r-4.7)fiphde_2.1.0.zip(r-4.6)fiphde_2.1.0.zip(r-4.5)
fiphde_2.1.0.tgz(r-4.6-any)fiphde_2.1.0.tgz(r-4.5-any)
fiphde_2.1.0.tar.gz(r-4.7-any)fiphde_2.1.0.tar.gz(r-4.6-any)
fiphde_2.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
fiphde/json (API)

# Install 'fiphde' in R:

install.packages('fiphde', repos = c('https://stephenturner.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/signaturescience/fiphde/issues

Pkgdown/docs site:https://signaturescience.github.io

On CRAN:

3.90 score 4 stars 10 scripts 31 exports 115 dependencies

Last updated from:1ab58967a2. Checks:9 OK. Indexed: no.

Target	Result	Time
linux-devel-x86_64	OK	445
source / vignettes	OK	259
linux-release-x86_64	OK	432
macos-release-arm64	OK	218
macos-oldrel-arm64	OK	265
windows-devel	OK	414
windows-release	OK	428
windows-oldrel	OK	464
wasm-release	OK	165

Exports:%>%clin_nowcast fiphde_launcher forecast_categorical forecast_ili format_for_submission get_cdc_clin get_cdc_hosp get_cdc_ili get_hdgov_hosp get_nhsn_weekly get_nowcast_ili glm_wrap is_monday make_tsibble mmwr_week_to_date mnz mnz_replace ns_impute plot_forecast plot_forecast_categorical pois_forc prep_hdgov_hosp prep_nhsn_weekly replace_ili_nowcast smoothie this_monday this_saturday ts_fit_forecast ts_format_for_submission validate_forecast

Dependencies:abind anytime arm askpass backports base64enc BH bit bit64 boot bslib cachem checkmate ciTools cli clipr coda codetools commonmark cpp11 crayon curl digest distfromq distributional dplyr fable fabletools farver fastmap fontawesome fs furrr future generics ggdist ggplot2 globals glue gtable hardhat hms htmltools httpuv httr isoband jquerylib jsonlite labeling later lattice lifecycle listenv lme4 lubridate magrittr MASS Matrix memoise mime minqa MMWRweek nlme nloptr numDeriv openssl otel parallelly pillar pkgconfig prettyunits progress progressr promises purrr quadprog R6 rappdirs rbibutils RColorBrewer Rcpp RcppEigen Rdpack readr reformulas rlang rsample S7 sass scales shiny slider sourcetools sparsevctrs stringi stringr survival sys tibble tidyr tidyselect timechange trendeval trending tsibble tzdb utf8 vctrs viridisLite vroom warp withr xtable yardstick zeallot

Basic Usage

Rendered frombasic_usage.Rmdusingknitr::rmarkdown

Last update: 2024-01-11
Started: 2022-06-02

Help page	Topics
Make clean column names	.mcga
Nowcast clinical laboratory percent positive flu data	clin_nowcast
Calculate categorical probability density	density_probs
FIPHDE explorer app launcher	fiphde_launcher
Forecast categorical targets	forecast_categorical
Forecast ILI	forecast_ili
Format forecasts for submission	format_for_submission
Retrieve clinical laboratory percent positive flu data	get_cdc_clin
Retrieve hospitalization data from FluSurv-NET	get_cdc_hosp
Retrieve ILI data from ILINet	get_cdc_ili
Retrieve hospitalization data from HHS	get_hdgov_hosp
Retrieve weekly NHSN flu hospitalization data	get_nhsn_weekly
Retrieve ILI nowcast	get_nowcast_ili
Retrieve data from RESP-NET	get_respnet
Fit glm models	glm_fit
Forecast glm models	glm_forecast
Get quantiles from prediction intervals	glm_quibble
Run glm modeling and forecasting	glm_wrap
Laboratory-confirmed influenza hospitalizations	hospitalizations
Hubverse formatting	hubverse_format
Retrieve ILINet surveillance data	ilinet
Check Monday	is_monday
Make 'tsibble'	make_tsibble
Convert MMWR format to date	mmwr_week_to_date
Minimum non-zero	mnz
Minimum non-zero replacement	mnz_replace
Non-seasonal flu hospitalization imputation	ns_impute
Plot forecasts	plot_forecast
Plot categorical forecasts	plot_forecast_categorical
Simple Poisson count forecaster	pois_forc
Prep hospitalization data	prep_hdgov_hosp
Prepare NHSN weekly data	prep_nhsn_weekly
Replace ILINet data with nowcast	replace_ili_nowcast
Round and preserve vector	round_preserve
Calculate smoothed and weighted averages of previous observations	smoothie
Get Monday	this_monday
Get Saturday	this_saturday
Clean numeric values	to_num
Fit and forecast with time-series approaches	ts_fit_forecast
Format time series forecast	ts_format_for_submission
Validate forecast submission	validate_forecast
WHO/NREVSS clinical lab surveillance data	who_nrevss

Package: fiphde 2.1.0

fiphde: Forecasting Influenza in Support of Public Health Decision Making

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)