{
  "_id": "6a252ffd4b233be1983959f2",
  "Package": "fiphde",
  "Title": "Forecasting Influenza in Support of Public Health Decision\nMaking",
  "Version": "2.1.0",
  "Authors@R": "c(person(given = \"VP\",\nfamily = \"Nagraj\",\nrole = c(\"aut\", \"cre\"),\nemail = \"pnagraj@signaturescience.com\",\ncomment = c(ORCID = \"0000-0003-0060-566X\")),\nperson(given = \"Desiree\",\nfamily = \"Williams\",\nrole = \"aut\"),\nperson(given = \"Shakeel\",\nfamily = \"Jessa\",\nrole = \"aut\"),\nperson(given = \"Chris\",\nfamily = \"Hulme-Lowe\",\nrole = \"aut\"),\nperson(given = \"Stephen\",\nfamily = \"Turner\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0001-9140-9028\"))\n)",
  "Description": "Miscellaneous functions for retrieving data, creating and\nevaluating time series forecasting models for influenza-like\nillness (ILI) and influenza hospitalizations in the United\nStates.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Remotes": [
    "signaturescience/rplanes",
    "reichlab/distfromq"
  ],
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "URL": "https://signaturescience.github.io/fiphde/,\nhttps://github.com/signaturescience/fiphde",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev\nlibx11-dev zlib1g-dev",
  "Repository": "https://stephenturner.r-universe.dev",
  "Date/Publication": "2024-12-27 03:11:51 UTC",
  "RemoteUrl": "https://github.com/signaturescience/fiphde",
  "RemoteRef": "HEAD",
  "RemoteSha": "1ab58967a2853e7856d00f883e1b07b1074b8a2c",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-07 08:38:31 UTC",
    "User": "root"
  },
  "Author": "VP Nagraj [aut, cre] (ORCID: <https://orcid.org/0000-0003-0060-566X>),\nDesiree Williams [aut],\nShakeel Jessa [aut],\nChris Hulme-Lowe [aut],\nStephen Turner [aut] (ORCID: <https://orcid.org/0000-0001-9140-9028>)",
  "Maintainer": "VP Nagraj <pnagraj@signaturescience.com>",
  "MD5sum": "9331d8ca45661458f08d7a2110605bf7",
  "_user": "stephenturner",
  "_type": "src",
  "_file": "fiphde_2.1.0.tar.gz",
  "_fileid": "f18ad544ca877f98e75c50731410e4f63b944d2d6ae1b3ba1557f38e93fe43ab",
  "_filesize": 4024381,
  "_sha256": "f18ad544ca877f98e75c50731410e4f63b944d2d6ae1b3ba1557f38e93fe43ab",
  "_created": "2026-06-07T08:38:31.000Z",
  "_published": "2026-06-07T08:46:53.528Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79944969967,
      "time": 445,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7462489909"
    },
    {
      "job": 79944969958,
      "time": 432,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462488148"
    },
    {
      "job": 79944969962,
      "time": 265,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7462468162"
    },
    {
      "job": 79944969964,
      "time": 218,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462462612"
    },
    {
      "job": 79944733646,
      "time": 259,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462436110"
    },
    {
      "job": 79944970009,
      "time": 165,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462456197"
    },
    {
      "job": 79944969982,
      "time": 414,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7462486067"
    },
    {
      "job": 79944969976,
      "time": 464,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7462492055"
    },
    {
      "job": 79944969977,
      "time": 428,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7462487876"
    }
  ],
  "_buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27087496878",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/signaturescience/fiphde",
  "_commit": {
    "id": "1ab58967a2853e7856d00f883e1b07b1074b8a2c",
    "author": "VP Nagraj <pnagraj@signaturescience.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #229 from signaturescience/dev\n\nv2.1.0 release",
    "time": 1735269111
  },
  "_maintainer": {
    "name": "VP Nagraj",
    "email": "pnagraj@signaturescience.com",
    "login": "vpnagraj",
    "description": "",
    "uuid": 8546787,
    "orcid": "0000-0003-0060-566X"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "fable",
      "role": "Imports"
    },
    {
      "package": "fabletools",
      "version": ">= 0.3.2",
      "role": "Imports"
    },
    {
      "package": "lubridate",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "MMWRweek",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "tsibble",
      "role": "Imports"
    },
    {
      "package": "trending",
      "version": ">= 0.1.0",
      "role": "Imports"
    },
    {
      "package": "trendeval",
      "version": ">= 0.1.0",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "readr",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "distfromq",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "plotly",
      "role": "Suggests"
    },
    {
      "package": "shinyWidgets",
      "role": "Suggests"
    },
    {
      "package": "here",
      "role": "Suggests"
    },
    {
      "package": "DT",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "feasts",
      "role": "Suggests"
    },
    {
      "package": "urca",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "waiter",
      "role": "Suggests"
    },
    {
      "package": "rplanes",
      "role": "Suggests"
    }
  ],
  "_owner": "signaturescience",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 4,
  "_contributors": [
    {
      "user": "vpnagraj",
      "count": 361,
      "uuid": 8546787
    },
    {
      "user": "stephenturner",
      "count": 258,
      "uuid": 460076
    },
    {
      "user": "shakeeljessa",
      "count": 19,
      "uuid": 52427643
    },
    {
      "user": "dwill023",
      "count": 6,
      "uuid": 38054440
    },
    {
      "user": "chulmelowe",
      "count": 2,
      "uuid": 44985021
    }
  ],
  "_userbio": {
    "uuid": 460076,
    "type": "user",
    "name": "Stephen Turner",
    "description": "Associate Professor at the University of Virginia School of Data Science."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/fiphde"
  },
  "_devurl": "https://github.com/signaturescience/fiphde",
  "_pkgdown": "https://signaturescience.github.io/fiphde/",
  "_searchresults": 10,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/fiphde.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "%>%",
    "clin_nowcast",
    "fiphde_launcher",
    "forecast_categorical",
    "forecast_ili",
    "format_for_submission",
    "get_cdc_clin",
    "get_cdc_hosp",
    "get_cdc_ili",
    "get_hdgov_hosp",
    "get_nhsn_weekly",
    "get_nowcast_ili",
    "glm_wrap",
    "is_monday",
    "make_tsibble",
    "mmwr_week_to_date",
    "mnz",
    "mnz_replace",
    "ns_impute",
    "plot_forecast",
    "plot_forecast_categorical",
    "pois_forc",
    "prep_hdgov_hosp",
    "prep_nhsn_weekly",
    "replace_ili_nowcast",
    "smoothie",
    "this_monday",
    "this_saturday",
    "ts_fit_forecast",
    "ts_format_for_submission",
    "validate_forecast"
  ],
  "_help": [
    {
      "page": "dot-mcga",
      "title": "Make clean column names",
      "topics": [
        ".mcga"
      ]
    },
    {
      "page": "clin_nowcast",
      "title": "Nowcast clinical laboratory percent positive flu data",
      "topics": [
        "clin_nowcast"
      ]
    },
    {
      "page": "density_probs",
      "title": "Calculate categorical probability density",
      "topics": [
        "density_probs"
      ]
    },
    {
      "page": "fiphde_launcher",
      "title": "FIPHDE explorer app launcher",
      "topics": [
        "fiphde_launcher"
      ]
    },
    {
      "page": "forecast_categorical",
      "title": "Forecast categorical targets",
      "topics": [
        "forecast_categorical"
      ]
    },
    {
      "page": "forecast_ili",
      "title": "Forecast ILI",
      "topics": [
        "forecast_ili"
      ]
    },
    {
      "page": "format_for_submission",
      "title": "Format forecasts for submission",
      "topics": [
        "format_for_submission"
      ]
    },
    {
      "page": "get_cdc_clin",
      "title": "Retrieve clinical laboratory percent positive flu data",
      "topics": [
        "get_cdc_clin"
      ]
    },
    {
      "page": "get_cdc_hosp",
      "title": "Retrieve hospitalization data from FluSurv-NET",
      "topics": [
        "get_cdc_hosp"
      ]
    },
    {
      "page": "get_cdc_ili",
      "title": "Retrieve ILI data from ILINet",
      "topics": [
        "get_cdc_ili"
      ]
    },
    {
      "page": "get_hdgov_hosp",
      "title": "Retrieve hospitalization data from HHS",
      "topics": [
        "get_hdgov_hosp"
      ]
    },
    {
      "page": "get_nhsn_weekly",
      "title": "Retrieve weekly NHSN flu hospitalization data",
      "topics": [
        "get_nhsn_weekly"
      ]
    },
    {
      "page": "get_nowcast_ili",
      "title": "Retrieve ILI nowcast",
      "topics": [
        "get_nowcast_ili"
      ]
    },
    {
      "page": "get_respnet",
      "title": "Retrieve data from RESP-NET",
      "topics": [
        "get_respnet"
      ]
    },
    {
      "page": "glm_fit",
      "title": "Fit glm models",
      "topics": [
        "glm_fit"
      ]
    },
    {
      "page": "glm_forecast",
      "title": "Forecast glm models",
      "topics": [
        "glm_forecast"
      ]
    },
    {
      "page": "glm_quibble",
      "title": "Get quantiles from prediction intervals",
      "topics": [
        "glm_quibble"
      ]
    },
    {
      "page": "glm_wrap",
      "title": "Run glm modeling and forecasting",
      "topics": [
        "glm_wrap"
      ]
    },
    {
      "page": "hospitalizations",
      "title": "Laboratory-confirmed influenza hospitalizations",
      "topics": [
        "hospitalizations"
      ]
    },
    {
      "page": "hubverse_format",
      "title": "Hubverse formatting",
      "topics": [
        "hubverse_format"
      ]
    },
    {
      "page": "ilinet",
      "title": "Retrieve ILINet surveillance data",
      "topics": [
        "ilinet"
      ]
    },
    {
      "page": "is_monday",
      "title": "Check Monday",
      "topics": [
        "is_monday"
      ]
    },
    {
      "page": "make_tsibble",
      "title": "Make 'tsibble'",
      "topics": [
        "make_tsibble"
      ]
    },
    {
      "page": "mmwr_week_to_date",
      "title": "Convert MMWR format to date",
      "topics": [
        "mmwr_week_to_date"
      ]
    },
    {
      "page": "mnz",
      "title": "Minimum non-zero",
      "topics": [
        "mnz"
      ]
    },
    {
      "page": "mnz_replace",
      "title": "Minimum non-zero replacement",
      "topics": [
        "mnz_replace"
      ]
    },
    {
      "page": "ns_impute",
      "title": "Non-seasonal flu hospitalization imputation",
      "topics": [
        "ns_impute"
      ]
    },
    {
      "page": "plot_forecast",
      "title": "Plot forecasts",
      "topics": [
        "plot_forecast"
      ]
    },
    {
      "page": "plot_forecast_categorical",
      "title": "Plot categorical forecasts",
      "topics": [
        "plot_forecast_categorical"
      ]
    },
    {
      "page": "pois_forc",
      "title": "Simple Poisson count forecaster",
      "topics": [
        "pois_forc"
      ]
    },
    {
      "page": "prep_hdgov_hosp",
      "title": "Prep hospitalization data",
      "topics": [
        "prep_hdgov_hosp"
      ]
    },
    {
      "page": "prep_nhsn_weekly",
      "title": "Prepare NHSN weekly data",
      "topics": [
        "prep_nhsn_weekly"
      ]
    },
    {
      "page": "replace_ili_nowcast",
      "title": "Replace ILINet data with nowcast",
      "topics": [
        "replace_ili_nowcast"
      ]
    },
    {
      "page": "round_preserve",
      "title": "Round and preserve vector",
      "topics": [
        "round_preserve"
      ]
    },
    {
      "page": "smoothie",
      "title": "Calculate smoothed and weighted averages of previous observations",
      "topics": [
        "smoothie"
      ]
    },
    {
      "page": "this_monday",
      "title": "Get Monday",
      "topics": [
        "this_monday"
      ]
    },
    {
      "page": "this_saturday",
      "title": "Get Saturday",
      "topics": [
        "this_saturday"
      ]
    },
    {
      "page": "to_num",
      "title": "Clean numeric values",
      "topics": [
        "to_num"
      ]
    },
    {
      "page": "ts_fit_forecast",
      "title": "Fit and forecast with time-series approaches",
      "topics": [
        "ts_fit_forecast"
      ]
    },
    {
      "page": "ts_format_for_submission",
      "title": "Format time series forecast",
      "topics": [
        "ts_format_for_submission"
      ]
    },
    {
      "page": "validate_forecast",
      "title": "Validate forecast submission",
      "topics": [
        "validate_forecast"
      ]
    },
    {
      "page": "who_nrevss",
      "title": "WHO/NREVSS clinical lab surveillance data",
      "topics": [
        "who_nrevss"
      ]
    }
  ],
  "_readme": "https://github.com/signaturescience/fiphde/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "anytime",
    "arm",
    "askpass",
    "backports",
    "base64enc",
    "BH",
    "bit",
    "bit64",
    "boot",
    "bslib",
    "cachem",
    "checkmate",
    "ciTools",
    "cli",
    "clipr",
    "coda",
    "codetools",
    "commonmark",
    "cpp11",
    "crayon",
    "curl",
    "digest",
    "distfromq",
    "distributional",
    "dplyr",
    "fable",
    "fabletools",
    "farver",
    "fastmap",
    "fontawesome",
    "fs",
    "furrr",
    "future",
    "generics",
    "ggdist",
    "ggplot2",
    "globals",
    "glue",
    "gtable",
    "hardhat",
    "hms",
    "htmltools",
    "httpuv",
    "httr",
    "isoband",
    "jquerylib",
    "jsonlite",
    "labeling",
    "later",
    "lattice",
    "lifecycle",
    "listenv",
    "lme4",
    "lubridate",
    "magrittr",
    "MASS",
    "Matrix",
    "memoise",
    "mime",
    "minqa",
    "MMWRweek",
    "nlme",
    "nloptr",
    "numDeriv",
    "openssl",
    "otel",
    "parallelly",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "progressr",
    "promises",
    "purrr",
    "quadprog",
    "R6",
    "rappdirs",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "Rdpack",
    "readr",
    "reformulas",
    "rlang",
    "rsample",
    "S7",
    "sass",
    "scales",
    "shiny",
    "slider",
    "sourcetools",
    "sparsevctrs",
    "stringi",
    "stringr",
    "survival",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "trendeval",
    "trending",
    "tsibble",
    "tzdb",
    "utf8",
    "vctrs",
    "viridisLite",
    "vroom",
    "warp",
    "withr",
    "xtable",
    "yardstick",
    "zeallot"
  ],
  "_vignettes": [
    {
      "source": "basic_usage.Rmd",
      "filename": "basic_usage.html",
      "title": "Basic Usage",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Usage",
        "Data retrieval",
        "Time series forecasting",
        "Data preparation",
        "Fit a model and forecast",
        "Count regression forecasting",
        "ILI retrieval and prep"
      ],
      "created": "2022-06-02 17:01:51",
      "modified": "2024-01-11 15:18:09",
      "commits": 5
    }
  ],
  "_score": 3.9030899869919438,
  "_indexed": false,
  "_nocasepkg": "fiphde",
  "_universes": [
    "stephenturner"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.1.0",
      "date": "2026-06-07T08:41:24.000Z",
      "distro": "noble",
      "commit": "1ab58967a2853e7856d00f883e1b07b1074b8a2c",
      "fileid": "d07890f06b624e89a4a4833889f8caaf50d7923cb068e415443a9766e3e89c8a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27087496878"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.1.0",
      "date": "2026-06-07T08:41:22.000Z",
      "distro": "noble",
      "commit": "1ab58967a2853e7856d00f883e1b07b1074b8a2c",
      "fileid": "0eb44d9ea1420a3f7f228c246070c868834f90881ed593686da28221520398a1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27087496878"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.1.0",
      "date": "2026-06-07T08:40:11.000Z",
      "commit": "1ab58967a2853e7856d00f883e1b07b1074b8a2c",
      "fileid": "69679d42b26141a2084b47222dee605dcfa60702eecdf800a244f16090ae738e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27087496878"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.1.0",
      "date": "2026-06-07T08:40:01.000Z",
      "commit": "1ab58967a2853e7856d00f883e1b07b1074b8a2c",
      "fileid": "ce0487246e4b869ea06b7b8dc2103dd19e8e17ff79f961d20ba24e8ef49f53e4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27087496878"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.1.0",
      "date": "2026-06-07T08:41:35.000Z",
      "commit": "1ab58967a2853e7856d00f883e1b07b1074b8a2c",
      "fileid": "17dd80039e8a1785ca69aef7417ea89265b12fcbf61bad646dd510e34b143350",
      "status": "success",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27087496878"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.1.0",
      "date": "2026-06-07T08:40:23.000Z",
      "commit": "1ab58967a2853e7856d00f883e1b07b1074b8a2c",
      "fileid": "c3618645f7e623e37fdc3ea90a41f55786016798670225c77e82c5db69d43790",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27087496878"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.1.0",
      "date": "2026-06-07T08:40:16.000Z",
      "commit": "1ab58967a2853e7856d00f883e1b07b1074b8a2c",
      "fileid": "faa74febf5f962a3aa74e31b49e8748ec1348a08ba7f155ed08b771a30cdcb76",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27087496878"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.1.0",
      "date": "2026-06-07T08:40:21.000Z",
      "commit": "1ab58967a2853e7856d00f883e1b07b1074b8a2c",
      "fileid": "79f88c930b4affccffd50a942f9562d2c0f91939d112dc35e4e4521ecb308872",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27087496878"
    }
  ]
}