Package: biorecap 0.2.1

biorecap: Retrieve and summarize bioRxiv and medRxiv preprints with a local LLM using ollama
Retrieve and summarize bioRxiv and medRxiv preprints with a local LLM using ollama.
Authors:
biorecap_0.2.1.tar.gz
biorecap_0.2.1.zip(r-4.7)biorecap_0.2.1.zip(r-4.6)biorecap_0.2.1.zip(r-4.5)
biorecap_0.2.1.tgz(r-4.6-any)biorecap_0.2.1.tgz(r-4.5-any)
biorecap_0.2.1.tar.gz(r-4.7-any)biorecap_0.2.1.tar.gz(r-4.6-any)
biorecap_0.2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
biorecap/json (API)
NEWS
| # Install 'biorecap' in R: |
| install.packages('biorecap', repos = c('https://stephenturner.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/stephenturner/biorecap/issues
Pkgdown/docs site:https://stephenturner.github.io
- example_preprints - Example preprints with summaries
- subjects - BioRxiv subjects
Last updated from:a53b93b5b5. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 152 | ||
| source / vignettes | OK | 204 | ||
| linux-release-x86_64 | OK | 145 | ||
| macos-release-arm64 | OK | 82 | ||
| macos-oldrel-arm64 | OK | 106 | ||
| windows-devel | OK | 101 | ||
| windows-release | OK | 102 | ||
| windows-oldrel | OK | 99 | ||
| wasm-release | OK | 124 |
Exports:add_promptadd_prompt_subjectadd_summarybiorecap_reportbuild_prompt_preprintbuild_prompt_subjectget_preprintslist_modelssafely_query_rsstest_connectiontt_preprints
Dependencies:anytimeaskpassbase64encBHbslibcachemclicrayoncurldigestdplyrevaluatefastmapfontawesomefsgenericsgluehighrhtmltoolshttrhttr2jquerylibjsonliteknitrlifecyclemagrittrmemoisemimeollamaropensslpillarpkgconfigpurrrR6rappdirsRcpprlangrmarkdownsasssystibbletidyRSStidyselecttinytabletinytexutf8vctrswithrxfunxml2yaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Add prompt to a data frame of preprints | add_prompt |
| Add prompts for an entire subject | add_prompt_subject |
| Generate a summary from a data frame of prompts | add_summary |
| Create a report from bioRxiv/medRxiv preprints | biorecap_report |
| Construct a prompt to summarize a paper | build_prompt_preprint |
| Construct a prompt to summarize a set of papers from a subject | build_prompt_subject |
| Example preprints with summaries | example_preprints |
| Get bioRxiv/medRxiv preprints | get_preprints |
| Safely query bioRxiv/medRxiv RSS feeds | safely_query_rss |
| bioRxiv subjects | subjects |
| Create a markdown table from prepreprint summaries | tt_preprints |
