Package: biorecap 0.1.1
biorecap: Retrieve and summarize bioRxiv preprints with a local LLM using ollama
Retrieve and summarize bioRxiv preprints with a local LLM using ollama.
Authors:
biorecap_0.1.1.tar.gz
biorecap_0.1.1.zip(r-4.5)biorecap_0.1.1.zip(r-4.4)biorecap_0.1.1.zip(r-4.3)
biorecap_0.1.1.tgz(r-4.4-any)biorecap_0.1.1.tgz(r-4.3-any)
biorecap_0.1.1.tar.gz(r-4.5-noble)biorecap_0.1.1.tar.gz(r-4.4-noble)
biorecap_0.1.1.tgz(r-4.4-emscripten)biorecap_0.1.1.tgz(r-4.3-emscripten)
biorecap.pdf |biorecap.html✨
biorecap/json (API)
NEWS
# Install 'biorecap' in R: |
install.packages('biorecap', repos = c('https://stephenturner.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/stephenturner/biorecap/issues
- example_preprints - Example preprints with summaries
- subjects - BioRxiv subjects
Last updated 23 days agofrom:64d927a0db. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 26 2024 |
R-4.5-win | NOTE | Aug 26 2024 |
R-4.5-linux | NOTE | Aug 26 2024 |
R-4.4-win | NOTE | Aug 26 2024 |
R-4.4-mac | NOTE | Aug 26 2024 |
R-4.3-win | NOTE | Aug 26 2024 |
R-4.3-mac | NOTE | Aug 26 2024 |
Exports:add_promptadd_prompt_subjectadd_summarybiorecap_reportbuild_prompt_preprintbuild_prompt_subjectget_preprintslist_modelstest_connectiontt_preprints
Dependencies:anytimeaskpassbase64encBHbslibcachemclicrayoncurldigestdplyrevaluatefansifastmapfontawesomefsgenericsgluehighrhtmltoolshttrhttr2jquerylibjsonliteknitrlifecyclemagrittrmemoisemimeollamaropensslpillarpkgconfigpurrrR6rappdirsRcpprlangrmarkdownsasssystibbletidyRSStidyselecttinytabletinytexutf8vctrswithrxfunxml2yaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Add prompt to a data frame of preprints | add_prompt |
Add prompts for an entire subject | add_prompt_subject |
Generate a summary from a data frame of prompts | add_summary |
Create a report from bioRxiv preprints | biorecap_report |
Construct a prompt to summarize a paper | build_prompt_preprint |
Construct a prompt to summarize a set of papers from a subject | build_prompt_subject |
Example preprints with summaries | example_preprints |
Get bioRxiv preprints | get_preprints |
bioRxiv subjects | subjects |
Create a markdown table from prepreprint summaries | tt_preprints |