{
  "_id": "6a48cbc6b5e98c40829fc956",
  "Package": "biorecap",
  "Title": "Retrieve and summarize bioRxiv and medRxiv preprints with a\nlocal LLM using ollama",
  "Version": "0.2.1",
  "Authors@R": "person(\"Stephen\", \"Turner\", , \"vustephen@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-9140-9028\"))",
  "Description": "Retrieve and summarize bioRxiv and medRxiv preprints with\na local LLM using ollama.",
  "License": "MIT + file LICENSE",
  "URL": "https://stephenturner.github.io/biorecap/",
  "BugReports": "https://github.com/stephenturner/biorecap/issues",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Config/pak/sysreqs": "cmake make libuv1-dev libxml2-dev libssl-dev",
  "Repository": "https://stephenturner.r-universe.dev",
  "Date/Publication": "2024-09-27 09:19:59 UTC",
  "RemoteUrl": "https://github.com/stephenturner/biorecap",
  "RemoteRef": "HEAD",
  "RemoteSha": "a53b93b5b57d00f5974442ceedf0ab828c357e4d",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-04 08:31:45 UTC",
    "User": "root"
  },
  "Author": "Stephen Turner [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-9140-9028>)",
  "Maintainer": "Stephen Turner <vustephen@gmail.com>",
  "_user": "stephenturner",
  "_type": "src",
  "_file": "biorecap_0.2.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/9c03f534369beb3e4b3e19e214075314c2fb0aad4fc58c84eeb7a2ea85eb4bc5",
  "_filesize": 698649,
  "_sha256": "9c03f534369beb3e4b3e19e214075314c2fb0aad4fc58c84eeb7a2ea85eb4bc5",
  "_expires": "2026-10-12T09:00:52.000Z",
  "_created": "2026-07-04T08:31:45.000Z",
  "_published": "2026-07-04T09:00:54.291Z",
  "_jobs": [
    {
      "job": 85117911504,
      "time": 154,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8080077534"
    },
    {
      "job": 85117911509,
      "time": 125,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8080074524"
    },
    {
      "job": 85117911501,
      "time": 122,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8080257347"
    },
    {
      "job": 85117911517,
      "time": 99,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8080258215"
    },
    {
      "job": 85117717289,
      "time": 184,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8080059239"
    },
    {
      "job": 85117911503,
      "time": 157,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8080077871"
    },
    {
      "job": 85117911531,
      "time": 96,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8080070942"
    },
    {
      "job": 85117911518,
      "time": 108,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8080072432"
    },
    {
      "job": 85117911510,
      "time": 92,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8080070447"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/stephenturner/actions/runs/28700536104",
  "_status": "success",
  "_upstream": "https://github.com/stephenturner/biorecap",
  "_commit": {
    "id": "a53b93b5b57d00f5974442ceedf0ab828c357e4d",
    "author": "Stephen Turner <vustephen@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #10 from stephenturner/dev\n\nmisc fixes",
    "time": 1727428799
  },
  "_maintainer": {
    "name": "Stephen Turner",
    "email": "vustephen@gmail.com",
    "login": "stephenturner",
    "bluesky": "@stephenturner.us",
    "linkedin": "in/turnersd",
    "orcid": "0000-0001-9140-9028",
    "twitter": "@strnr",
    "description": "Associate Professor at the University of Virginia School of Data Science.",
    "uuid": 460076
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2.0",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ollamar",
      "version": ">= 1.2.1",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidyRSS",
      "role": "Imports"
    },
    {
      "package": "tinytable",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "stephenturner",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 74,
  "_contributors": [
    {
      "user": "stephenturner",
      "count": 42,
      "uuid": 460076
    },
    {
      "user": "vpnagraj",
      "count": 1,
      "uuid": 8546787
    }
  ],
  "_userbio": {
    "uuid": 460076,
    "type": "user",
    "name": "Stephen Turner",
    "followers": 936,
    "description": "Associate Professor at the University of Virginia School of Data Science."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/biorecap"
  },
  "_devurl": "https://github.com/stephenturner/biorecap",
  "_pkgdown": "https://stephenturner.github.io/biorecap/",
  "_searchresults": 5,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/biorecap.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "add_prompt",
    "add_prompt_subject",
    "add_summary",
    "biorecap_report",
    "build_prompt_preprint",
    "build_prompt_subject",
    "get_preprints",
    "list_models",
    "safely_query_rss",
    "test_connection",
    "tt_preprints"
  ],
  "_datasets": [
    {
      "name": "example_preprints",
      "title": "Example preprints with summaries",
      "object": "example_preprints",
      "class": [
        "preprints_summary",
        "preprints_prompt",
        "preprints",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "source",
        "subject",
        "title",
        "url",
        "abstract",
        "prompt",
        "summary"
      ],
      "rows": 60,
      "table": true,
      "tojson": true
    },
    {
      "name": "subjects",
      "title": "bioRxiv subjects",
      "object": "subjects",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "add_prompt",
      "title": "Add prompt to a data frame of preprints",
      "topics": [
        "add_prompt"
      ]
    },
    {
      "page": "add_prompt_subject",
      "title": "Add prompts for an entire subject",
      "topics": [
        "add_prompt_subject"
      ]
    },
    {
      "page": "add_summary",
      "title": "Generate a summary from a data frame of prompts",
      "topics": [
        "add_summary"
      ]
    },
    {
      "page": "biorecap_report",
      "title": "Create a report from bioRxiv/medRxiv preprints",
      "topics": [
        "biorecap_report"
      ]
    },
    {
      "page": "build_prompt_preprint",
      "title": "Construct a prompt to summarize a paper",
      "topics": [
        "build_prompt_preprint"
      ]
    },
    {
      "page": "build_prompt_subject",
      "title": "Construct a prompt to summarize a set of papers from a subject",
      "topics": [
        "build_prompt_subject"
      ]
    },
    {
      "page": "example_preprints",
      "title": "Example preprints with summaries",
      "topics": [
        "example_preprints"
      ]
    },
    {
      "page": "get_preprints",
      "title": "Get bioRxiv/medRxiv preprints",
      "topics": [
        "get_preprints"
      ]
    },
    {
      "page": "safely_query_rss",
      "title": "Safely query bioRxiv/medRxiv RSS feeds",
      "topics": [
        "safely_query_rss"
      ]
    },
    {
      "page": "subjects",
      "title": "bioRxiv subjects",
      "topics": [
        "subjects"
      ]
    },
    {
      "page": "tt_preprints",
      "title": "Create a markdown table from prepreprint summaries",
      "topics": [
        "tt_preprints"
      ]
    }
  ],
  "_pkglogo": "https://github.com/stephenturner/biorecap/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/stephenturner/biorecap/raw/HEAD/README.md",
  "_rundeps": [
    "anytime",
    "askpass",
    "base64enc",
    "BH",
    "bslib",
    "cachem",
    "cli",
    "crayon",
    "curl",
    "digest",
    "dplyr",
    "evaluate",
    "fastmap",
    "fontawesome",
    "fs",
    "generics",
    "glue",
    "highr",
    "htmltools",
    "httr",
    "httr2",
    "jquerylib",
    "jsonlite",
    "knitr",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "ollamar",
    "openssl",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rappdirs",
    "Rcpp",
    "rlang",
    "rmarkdown",
    "sass",
    "sys",
    "tibble",
    "tidyRSS",
    "tidyselect",
    "tinytable",
    "tinytex",
    "utf8",
    "vctrs",
    "withr",
    "xfun",
    "xml2",
    "yaml"
  ],
  "_score": 3.568201724066995,
  "_indexed": true,
  "_nocasepkg": "biorecap",
  "_universes": [
    "stephenturner"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.1",
      "date": "2026-07-04T08:34:12.000Z",
      "distro": "resolute",
      "commit": "a53b93b5b57d00f5974442ceedf0ab828c357e4d",
      "fileid": "https://r2.ropensci.org/55d8e22e64bf5a0b3c22d5196d2054164fb40ef8c7fbe550ecd8be9fdc391068",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/28700536104"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.2.1",
      "date": "2026-07-04T08:33:49.000Z",
      "distro": "resolute",
      "commit": "a53b93b5b57d00f5974442ceedf0ab828c357e4d",
      "fileid": "https://r2.ropensci.org/7c63091aa291d5f88609b53295bac1a70dd9bce87e5bfa54901f81b5aa067198",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/28700536104"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.1",
      "date": "2026-07-04T09:00:12.000Z",
      "commit": "a53b93b5b57d00f5974442ceedf0ab828c357e4d",
      "fileid": "https://r2.ropensci.org/81e7e671f0fd63b8955d16f3f3890de3e2a0ada31275b6893eff0caccfc69755",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/28700536104"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.2.1",
      "date": "2026-07-04T09:00:15.000Z",
      "commit": "a53b93b5b57d00f5974442ceedf0ab828c357e4d",
      "fileid": "https://r2.ropensci.org/841034cfb94df398ecd680c420d7095bd51f456f33b1bb955b851b5f6c5fef79",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/28700536104"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2.1",
      "date": "2026-07-04T08:34:34.000Z",
      "commit": "a53b93b5b57d00f5974442ceedf0ab828c357e4d",
      "fileid": "https://r2.ropensci.org/ec7547a73e0436c2668a001da886aa41d7bd9fe9d6b9c73fcc9cfc8296dbfff9",
      "status": "success",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/28700536104"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2.1",
      "date": "2026-07-04T08:33:11.000Z",
      "commit": "a53b93b5b57d00f5974442ceedf0ab828c357e4d",
      "fileid": "https://r2.ropensci.org/b94e5b1e63408457c4685680406653e7594bb0034f9828195c49301cc16a36be",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/28700536104"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2.1",
      "date": "2026-07-04T08:33:21.000Z",
      "commit": "a53b93b5b57d00f5974442ceedf0ab828c357e4d",
      "fileid": "https://r2.ropensci.org/ddf7a4eab5cc588912bc2a05d0befd6946d0f868c3ce0c1b341489ddd7598602",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/28700536104"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.2.1",
      "date": "2026-07-04T08:33:07.000Z",
      "commit": "a53b93b5b57d00f5974442ceedf0ab828c357e4d",
      "fileid": "https://r2.ropensci.org/c06b4afbde74076b4e92a1369ebf5f09305337c6edff9be5df5c9d8b6e8a3b83",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/28700536104"
    }
  ]
}