Package: tfboot 1.0.1

tfboot: Bootstrapping and statistical analysis for TFBS-disrupting SNPs

Bootstrap motifbreakR results for statistical analysis on TFBS-disrupting SNPs in upstream regions of a set of genes of interest.

Authors:Stephen Turner [aut, cre], Colossal Biosciences [cph]

tfboot_1.0.1.tar.gz
tfboot_1.0.1.zip(r-4.5)tfboot_1.0.1.zip(r-4.4)
tfboot_1.0.1.tgz(r-4.5-any)tfboot_1.0.1.tgz(r-4.4-any)
tfboot_1.0.1.tar.gz(r-4.5-noble)tfboot_1.0.1.tar.gz(r-4.4-noble)
tfboot_1.0.1.tgz(r-4.4-emscripten)tfboot_1.0.1.tgz(r-4.3-emscripten)
tfboot.pdf |tfboot.html✨
tfboot/json (API)
NEWS

# Install 'tfboot' in R:
install.packages('tfboot', repos = c('https://stephenturner.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/colossal-compsci/tfboot/issues

Pkgdown site:https://colossal-compsci.github.io

Datasets:

On CRAN:

Conda:

bioconductorbioinformatics

3.30 score 4 stars 3 scripts 9 exports 99 dependencies

Last updated 1 years agofrom:32e2518007. Checks:7 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKMar 11 2025
R-4.5-winOKMar 11 2025
R-4.5-macOKMar 11 2025
R-4.5-linuxOKMar 11 2025
R-4.4-winOKMar 11 2025
R-4.4-macOKMar 11 2025
R-4.4-linuxOKMar 11 2025

Exports:get_upstreamget_upstream_snpsmb_bootstatsmb_bootstrapmb_summarizemb_to_tibbleplot_bootstatsread_vcfsplit_gr_by_id

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemclicodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArraydplyrfansifarverfastmapformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablehttrIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeMotifDbmunsellnlmeopensslpillarpkgconfigplogrplyrangespngpurrrR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsscalessnowSparseArraysplitstackshapestringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8VariantAnnotationvctrsviridisLitewithrXMLXVectoryaml

Statistical analysis of TFBS disruption with tfboot

Rendered fromintro.Rmdusingknitr::rmarkdownon Mar 11 2025.

Last update: 2024-02-07
Started: 2023-05-30