Package: tfboot 1.0.1

Stephen Turner

tfboot: Bootstrapping and statistical analysis for TFBS-disrupting SNPs

Bootstrap motifbreakR results for statistical analysis on TFBS-disrupting SNPs in upstream regions of a set of genes of interest.

Authors:Stephen Turner [aut, cre], Colossal Biosciences [cph]

tfboot_1.0.1.tar.gz
tfboot_1.0.1.zip(r-4.7)tfboot_1.0.1.zip(r-4.6)tfboot_1.0.1.zip(r-4.5)
tfboot_1.0.1.tgz(r-4.6-any)tfboot_1.0.1.tgz(r-4.5-any)
tfboot_1.0.1.tar.gz(r-4.7-any)tfboot_1.0.1.tar.gz(r-4.6-any)
tfboot_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
tfboot/json (API)
NEWS

# Install 'tfboot' in R:
install.packages('tfboot', repos = c('https://stephenturner.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/colossal-compsci/tfboot/issues

Pkgdown/docs site:https://colossal-compsci.github.io

Datasets:

On CRAN:

Conda:

bioconductorbioinformatics

2.40 score 5 stars 3 scripts 9 exports 93 dependencies

Last updated from:32e2518007. Checks:8 ERROR, 1 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR498
source / vignettesERROR410
linux-release-x86_64ERROR433
macos-release-arm64ERROR294
macos-oldrel-arm64ERROR304
windows-develERROR442
windows-releaseERROR386
windows-oldrelERROR366
wasm-releaseOK246

Exports:get_upstreamget_upstream_snpsmb_bootstatsmb_bootstrapmb_summarizemb_to_tibbleplot_bootstatsread_vcfsplit_gr_by_id

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemcigarilloclicodetoolscpp11crayoncurldata.tableDBIDelayedArraydplyrfarverfastmapformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablehttrIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeMotifDbopensslpillarpkgconfigplyrangespngpurrrR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraysplitstackshapestringistringrSummarizedExperimentsystibbletidyrtidyselectutf8VariantAnnotationvctrsviridisLitewithrXMLXVectoryaml