Package: kgp 1.1.1

kgp: 1000 Genomes Project Metadata

Metadata about populations and data about samples from the 1000 Genomes Project, including the 2,504 samples sequenced for the Phase 3 release and the expanded collection of 3,202 samples with 602 additional trios. The data is described in Auton et al. (2015) <doi:10.1038/nature15393> and Byrska-Bishop et al. (2022) <doi:10.1016/j.cell.2022.08.004>, and raw data is available at <http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/>. See Turner (2022) <doi:10.48550/arXiv.2210.00539> for more details.

Authors:Stephen Turner [aut, cre]

kgp_1.1.1.tar.gz
kgp_1.1.1.zip(r-4.5)kgp_1.1.1.zip(r-4.4)kgp_1.1.1.zip(r-4.3)
kgp_1.1.1.tgz(r-4.4-any)kgp_1.1.1.tgz(r-4.3-any)
kgp_1.1.1.tar.gz(r-4.5-noble)kgp_1.1.1.tar.gz(r-4.4-noble)
kgp_1.1.1.tgz(r-4.4-emscripten)kgp_1.1.1.tgz(r-4.3-emscripten)
kgp.pdf |kgp.html
kgp/json (API)
NEWS

# Install 'kgp' in R:
install.packages('kgp', repos = c('https://stephenturner.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/stephenturner/kgp/issues

Datasets:
  • allmeta - 1000 Genomes, SGDP, HGDP, and GGVP metadata
  • kgp3 - 1000 Genomes Project sample data
  • kgpe - 1000 Genomes Project sample data
  • kgpmeta - 1000 Genomes Project population metadata

On CRAN:

1000genomesbioinformaticsgeneticsgenomicsmetadatapopulation-geneticssequencing

3.98 score 19 stars 3 scripts 161 downloads 0 exports 0 dependencies

Last updated 2 years agofrom:284855372d. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 18 2024
R-4.5-winOKOct 18 2024
R-4.5-linuxOKOct 18 2024
R-4.4-winOKOct 18 2024
R-4.4-macOKOct 18 2024
R-4.3-winOKOct 18 2024
R-4.3-macOKOct 18 2024

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Dependencies: