{
  "_id": "6ac0b22191601a2ad29976ff",
  "Package": "skater",
  "Title": "Utilities for SNP-Based Kinship Analysis",
  "Description": "Utilities for single nucleotide polymorphism (SNP) based\nkinship analysis testing and evaluation. The 'skater' package\ncontains functions for importing, parsing, and analyzing\npedigree data, performing relationship degree inference,\nbenchmarking relationship degree classification, and\nsummarizing identity by descent (IBD) segment data. Package\nfunctions and methods are described in Turner et al. (2021)\n\"skater: An R package for SNP-based Kinship Analysis, Testing,\nand Evaluation\" <doi:10.1101/2021.07.21.453083>.",
  "Version": "0.2.0",
  "Authors@R": "c(person(given = \"Stephen\",\nfamily = \"Turner\",\nrole = \"aut\",\nemail = \"vustephen@gmail.com\",\ncomment = c(ORCID = \"0000-0001-9140-9028\")),\nperson(given = \"Matthew\",\nfamily = \"Scholz\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0003-3686-1227\")),\nperson(given = \"VP\",\nfamily = \"Nagraj\",\nrole = c(\"aut\", \"cre\"),\nemail = \"nagraj@nagraj.net\",\ncomment = c(ORCID = \"0000-0003-0060-566X\")),\nperson(\"Signature Science, LLC.\",\nrole = \"cph\"))",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/signaturescience/skater",
  "BugReports": "https://github.com/signaturescience/skater/issues",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "Roxygen": "list(markdown = TRUE)",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libicu-dev libx11-dev",
  "Repository": "https://stephenturner.r-universe.dev",
  "Date/Publication": "2026-03-07 17:58:03 UTC",
  "RemoteUrl": "https://github.com/signaturescience/skater",
  "RemoteRef": "HEAD",
  "RemoteSha": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-03 07:39:17 UTC",
    "User": "root"
  },
  "Author": "Stephen Turner [aut] (ORCID: <https://orcid.org/0000-0001-9140-9028>),\nMatthew Scholz [aut] (ORCID: <https://orcid.org/0000-0003-3686-1227>),\nVP Nagraj [aut, cre] (ORCID: <https://orcid.org/0000-0003-0060-566X>),\nSignature Science, LLC. [cph]",
  "Maintainer": "VP Nagraj <nagraj@nagraj.net>",
  "_user": "stephenturner",
  "_type": "src",
  "_file": "skater_0.2.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/c61e1c8a428cac6df4652fd3b0252e8d4fe7d8d1d092d1b18a340945c0103b49",
  "_filesize": 659255,
  "_sha256": "c61e1c8a428cac6df4652fd3b0252e8d4fe7d8d1d092d1b18a340945c0103b49",
  "_expires": "2027-01-11T07:43:25.000Z",
  "_created": "2026-10-03T07:39:17.000Z",
  "_published": "2026-10-03T07:43:27.512Z",
  "_jobs": [
    {
      "job": 111157593269,
      "time": 118,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11267104350"
    },
    {
      "job": 111157593162,
      "time": 172,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11267448823"
    },
    {
      "job": 111157593207,
      "time": 87,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11267299143"
    },
    {
      "job": 111157593238,
      "time": 111,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11268193556"
    },
    {
      "job": 111157118503,
      "time": 182,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11268725479"
    },
    {
      "job": 111157593139,
      "time": 107,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11267104334"
    },
    {
      "job": 111157593252,
      "time": 78,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11267868783"
    },
    {
      "job": 111157593542,
      "time": 69,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11267908690"
    },
    {
      "job": 111157593173,
      "time": 71,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11267658737"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/stephenturner/actions/runs/37106890098",
  "_status": "success",
  "_upstream": "https://github.com/signaturescience/skater",
  "_commit": {
    "id": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7",
    "author": "VP Nagraj <pnagraj@signaturescience.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #62 from signaturescience/dev\n\nadds pkgdown action spec",
    "time": 1772906283
  },
  "_maintainer": {
    "name": "VP Nagraj",
    "email": "nagraj@nagraj.net",
    "login": "vpnagraj",
    "description": "",
    "uuid": 8546787,
    "orcid": "0000-0003-0060-566X"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.0.0",
      "role": "Depends"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "readr",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "kinship2",
      "role": "Imports"
    },
    {
      "package": "corrr",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "signaturescience",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-10",
      "n": 3
    }
  ],
  "_tags": [
    {
      "name": "v0.2.0",
      "date": "2026-03-07"
    }
  ],
  "_stars": 10,
  "_contributors": [
    {
      "user": "stephenturner",
      "count": 207,
      "uuid": 460076
    },
    {
      "user": "vpnagraj",
      "count": 39,
      "uuid": 8546787
    },
    {
      "user": "genignored",
      "count": 9,
      "uuid": 60449161
    },
    {
      "user": "davisvaughan",
      "count": 1,
      "uuid": 19150088
    },
    {
      "user": "hadley",
      "count": 1,
      "uuid": 4196
    },
    {
      "user": "jennybc",
      "count": 1,
      "uuid": 599454
    }
  ],
  "_userbio": {
    "uuid": 460076,
    "type": "user",
    "name": "Stephen Turner",
    "followers": 966,
    "description": "Associate Professor at the University of Virginia School of Data Science."
  },
  "_downloads": {
    "count": 357,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/skater"
  },
  "_devurl": "https://github.com/signaturescience/skater",
  "_searchresults": 8,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/skater.html",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/signaturescience/skater",
  "_realowner": "signaturescience",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2021-12-03"
    },
    {
      "version": "0.1.1",
      "date": "2022-02-01"
    },
    {
      "version": "0.1.2",
      "date": "2023-01-31"
    },
    {
      "version": "0.2.0",
      "date": "2026-03-07"
    }
  ],
  "_exports": [
    "%>%",
    "arrange_ids",
    "confusion_matrix",
    "dibble",
    "fam2ped",
    "ibd2kin",
    "kin2cm",
    "kin2degree",
    "ped2kinpair",
    "plot_pedigree",
    "read_akt",
    "read_fam",
    "read_ibd",
    "read_ibis",
    "read_map",
    "read_plink2_king"
  ],
  "_help": [
    {
      "page": "arrange_ids",
      "title": "Order IDs across two columns",
      "topics": [
        "arrange_ids"
      ]
    },
    {
      "page": "calc_accuracy",
      "title": "Calculate Accuracy",
      "topics": [
        "calc_accuracy"
      ]
    },
    {
      "page": "calc_stats",
      "title": "Calculate various statistics from a confusion matrix",
      "topics": [
        "calc_stats"
      ]
    },
    {
      "page": "confusion_matrix",
      "title": "Calculate various statistics from a confusion matrix",
      "topics": [
        "confusion_matrix"
      ]
    },
    {
      "page": "dibble",
      "title": "Degree tibble",
      "topics": [
        "dibble"
      ]
    },
    {
      "page": "fam2ped",
      "title": "Fam to pedigree",
      "topics": [
        "fam2ped"
      ]
    },
    {
      "page": "ibd2kin",
      "title": "Compute kinship coefficient from IBD segments",
      "topics": [
        "ibd2kin"
      ]
    },
    {
      "page": "interpolate",
      "title": "Interpolate over segments",
      "topics": [
        "interpolate"
      ]
    },
    {
      "page": "kin2cm",
      "title": "Kinship coefficient to cM",
      "topics": [
        "kin2cm"
      ]
    },
    {
      "page": "kin2degree",
      "title": "Kinship coefficient to degree",
      "topics": [
        "kin2degree"
      ]
    },
    {
      "page": "ped2kinpair",
      "title": "Pedigree to pairwise kinship",
      "topics": [
        "ped2kinpair"
      ]
    },
    {
      "page": "plot_pedigree",
      "title": "Plot pedigree",
      "topics": [
        "plot_pedigree"
      ]
    },
    {
      "page": "read_akt",
      "title": "Read AKT kin output file",
      "topics": [
        "read_akt"
      ]
    },
    {
      "page": "read_fam",
      "title": "Read PLINK-formatted .fam file",
      "topics": [
        "read_fam"
      ]
    },
    {
      "page": "read_ibd",
      "title": "Read IBD segment file",
      "topics": [
        "read_ibd"
      ]
    },
    {
      "page": "read_ibis",
      "title": "Read IBIS coef output file",
      "topics": [
        "read_ibis"
      ]
    },
    {
      "page": "read_map",
      "title": "Read genetic map file",
      "topics": [
        "read_map"
      ]
    },
    {
      "page": "read_plink2_king",
      "title": "Read PLINK KING table",
      "topics": [
        "read_plink2_king"
      ]
    }
  ],
  "_readme": "https://github.com/signaturescience/skater/raw/HEAD/README.md",
  "_rundeps": [
    "bit",
    "bit64",
    "ca",
    "cli",
    "clipr",
    "cluster",
    "codetools",
    "colorspace",
    "corrr",
    "cpp11",
    "crayon",
    "dplyr",
    "evaluate",
    "farver",
    "foreach",
    "gclus",
    "generics",
    "ggplot2",
    "ggrepel",
    "glue",
    "gtable",
    "highr",
    "hms",
    "isoband",
    "iterators",
    "kinship2",
    "knitr",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "mgcv",
    "nlme",
    "permute",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "purrr",
    "qap",
    "quadprog",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "readr",
    "registry",
    "rlang",
    "S7",
    "scales",
    "seriation",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "TSP",
    "tzdb",
    "utf8",
    "vctrs",
    "vegan",
    "viridisLite",
    "vroom",
    "withr",
    "xfun",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "basic_usage.Rmd",
      "filename": "basic_usage.html",
      "title": "Basic Usage",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Pedigree parsing and manipulation",
        "Degree Inference",
        "Benchmarking Degree Classification",
        "IBD Segment Analysis"
      ],
      "created": "2021-07-19 13:50:44",
      "modified": "2021-12-27 17:54:11",
      "commits": 3
    }
  ],
  "_score": 5.3979400086720375,
  "_indexed": false,
  "_nocasepkg": "skater",
  "_universes": [
    "stephenturner"
  ],
  "_indexurl": "https://signaturescience.r-universe.dev/skater",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.0",
      "date": "2026-10-03T07:41:21.000Z",
      "distro": "resolute",
      "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7",
      "fileid": "https://r2.ropensci.org/adf4d6026376f8aaea4dc261939b34f8bd5d6850f7d2a15f53a0328f1c1461d9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/37106890098"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.2.0",
      "date": "2026-10-03T07:42:09.000Z",
      "distro": "resolute",
      "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7",
      "fileid": "https://r2.ropensci.org/0e31e8f5a95cbbfec214a6009422b6109bc56ea5ee1dc137f76f7c653dc2fa10",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/37106890098"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.0",
      "date": "2026-10-03T07:41:34.000Z",
      "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7",
      "fileid": "https://r2.ropensci.org/a2c92a8d16428176b7bbcac1872627fcda5dca21a92677690420d48bc0d240ab",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/37106890098"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.2.0",
      "date": "2026-10-03T07:42:41.000Z",
      "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7",
      "fileid": "https://r2.ropensci.org/586a5141ad003f81fc9387b5f737d9d875e9660733cc066ed254cf76effebf97",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/37106890098"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2.0",
      "date": "2026-10-03T07:41:21.000Z",
      "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7",
      "fileid": "https://r2.ropensci.org/66df3416d7254e00912059092780c4b4f53d66489d716b9a9da422d5431f69b1",
      "status": "success",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/37106890098"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2.0",
      "date": "2026-10-03T07:40:29.000Z",
      "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7",
      "fileid": "https://r2.ropensci.org/1f7d825ec2718d210131f263b4b1246e4bc261dfab0dc66729c003c76c1d3125",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/37106890098"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2.0",
      "date": "2026-10-03T07:40:28.000Z",
      "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7",
      "fileid": "https://r2.ropensci.org/18de014d0477dde41f19720fce14e6a10def1dc30ee76dbf458a83ec78390e22",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/37106890098"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.2.0",
      "date": "2026-10-03T07:40:28.000Z",
      "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7",
      "fileid": "https://r2.ropensci.org/33da5bfa7c49dcf0e2a5c8c26bcbeeba406288934abb6e3dd1c06329913fbae6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/37106890098"
    }
  ]
}