{ "_id": "6a22765fcd65a98ecbd4af6c", "Package": "skater", "Title": "Utilities for SNP-Based Kinship Analysis", "Description": "Utilities for single nucleotide polymorphism (SNP) based\nkinship analysis testing and evaluation. The 'skater' package\ncontains functions for importing, parsing, and analyzing\npedigree data, performing relationship degree inference,\nbenchmarking relationship degree classification, and\nsummarizing identity by descent (IBD) segment data. Package\nfunctions and methods are described in Turner et al. (2021)\n\"skater: An R package for SNP-based Kinship Analysis, Testing,\nand Evaluation\" .", "Version": "0.2.0", "Authors@R": "c(person(given = \"Stephen\",\nfamily = \"Turner\",\nrole = \"aut\",\nemail = \"vustephen@gmail.com\",\ncomment = c(ORCID = \"0000-0001-9140-9028\")),\nperson(given = \"Matthew\",\nfamily = \"Scholz\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0003-3686-1227\")),\nperson(given = \"VP\",\nfamily = \"Nagraj\",\nrole = c(\"aut\", \"cre\"),\nemail = \"nagraj@nagraj.net\",\ncomment = c(ORCID = \"0000-0003-0060-566X\")),\nperson(\"Signature Science, LLC.\",\nrole = \"cph\"))", "License": "MIT + file LICENSE", "URL": "https://github.com/signaturescience/skater", "BugReports": "https://github.com/signaturescience/skater/issues", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "Roxygen": "list(markdown = TRUE)", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libicu-dev libx11-dev", "Repository": "https://stephenturner.r-universe.dev", "Date/Publication": "2026-03-07 17:58:03 UTC", "RemoteUrl": "https://github.com/signaturescience/skater", "RemoteRef": "HEAD", "RemoteSha": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-05 07:07:22 UTC", "User": "root" }, "Author": "Stephen Turner [aut] (ORCID: ),\nMatthew Scholz [aut] (ORCID: ),\nVP Nagraj [aut, cre] (ORCID: ),\nSignature Science, LLC. [cph]", "Maintainer": "VP Nagraj ", "MD5sum": "28bcea5c62e542ef1c8fa19d654d04ea", "_user": "stephenturner", "_type": "src", "_file": "skater_0.2.0.tar.gz", "_fileid": "d8713f09980e005aadb9274726e33f08a6ef06044797cd88d108fb45deba4345", "_filesize": 658200, "_sha256": "d8713f09980e005aadb9274726e33f08a6ef06044797cd88d108fb45deba4345", "_created": "2026-06-05T07:07:22.000Z", "_published": "2026-06-05T07:10:23.831Z", "_distro": "noble", "_jobs": [ { "job": 79680746035, "time": 142, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7430824721" }, { "job": 79680746030, "time": 137, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7430823777" }, { "job": 79680746065, "time": 97, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7430813896" }, { "job": 79680746100, "time": 141, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7430824961" }, { "job": 79680248521, "time": 235, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7430787964" }, { "job": 79680746034, "time": 124, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7430820333" }, { "job": 79680746029, "time": 91, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7430812106" }, { "job": 79680746025, "time": 94, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7430813274" }, { "job": 79680746016, "time": 86, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7430811061" } ], "_buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27000687655", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/signaturescience/skater", "_commit": { "id": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7", "author": "VP Nagraj ", "committer": "GitHub ", "message": "Merge pull request #62 from signaturescience/dev\n\nadds pkgdown action spec", "time": 1772906283 }, "_maintainer": { "name": "VP Nagraj", "email": "nagraj@nagraj.net", "login": "vpnagraj", "description": "", "uuid": 8546787, "orcid": "0000-0003-0060-566X" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0.0", "role": "Depends" }, { "package": "magrittr", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "readr", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "kinship2", "role": "Imports" }, { "package": "corrr", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "markdown", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "signaturescience", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2026-10", "n": 3 } ], "_tags": [ { "name": "v0.2.0", "date": "2026-03-07" } ], "_stars": 10, "_contributors": [ { "user": "stephenturner", "count": 207, "uuid": 460076 }, { "user": "vpnagraj", "count": 39, "uuid": 8546787 }, { "user": "genignored", "count": 9, "uuid": 60449161 }, { "user": "davisvaughan", "count": 1, "uuid": 19150088 }, { "user": "hadley", "count": 1, "uuid": 4196 }, { "user": "jennybc", "count": 1, "uuid": 599454 } ], "_userbio": { "uuid": 460076, "type": "user", "name": "Stephen Turner", "description": "Associate Professor at the University of Virginia School of Data Science." }, "_downloads": { "count": 523, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/skater" }, "_devurl": "https://github.com/signaturescience/skater", "_searchresults": 7, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/skater.html", "manual.pdf" ], "_homeurl": "https://github.com/signaturescience/skater", "_realowner": "signaturescience", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2021-12-03" }, { "version": "0.1.1", "date": "2022-02-01" }, { "version": "0.1.2", "date": "2023-01-31" }, { "version": "0.2.0", "date": "2026-03-07" } ], "_exports": [ "%>%", "arrange_ids", "confusion_matrix", "dibble", "fam2ped", "ibd2kin", "kin2cm", "kin2degree", "ped2kinpair", "plot_pedigree", "read_akt", "read_fam", "read_ibd", "read_ibis", "read_map", "read_plink2_king" ], "_help": [ { "page": "arrange_ids", "title": "Order IDs across two columns", "topics": [ "arrange_ids" ] }, { "page": "calc_accuracy", "title": "Calculate Accuracy", "topics": [ "calc_accuracy" ] }, { "page": "calc_stats", "title": "Calculate various statistics from a confusion matrix", "topics": [ "calc_stats" ] }, { "page": "confusion_matrix", "title": "Calculate various statistics from a confusion matrix", "topics": [ "confusion_matrix" ] }, { "page": "dibble", "title": "Degree tibble", "topics": [ "dibble" ] }, { "page": "fam2ped", "title": "Fam to pedigree", "topics": [ "fam2ped" ] }, { "page": "ibd2kin", "title": "Compute kinship coefficient from IBD segments", "topics": [ "ibd2kin" ] }, { "page": "interpolate", "title": "Interpolate over segments", "topics": [ "interpolate" ] }, { "page": "kin2cm", "title": "Kinship coefficient to cM", "topics": [ "kin2cm" ] }, { "page": "kin2degree", "title": "Kinship coefficient to degree", "topics": [ "kin2degree" ] }, { "page": "ped2kinpair", "title": "Pedigree to pairwise kinship", "topics": [ "ped2kinpair" ] }, { "page": "plot_pedigree", "title": "Plot pedigree", "topics": [ "plot_pedigree" ] }, { "page": "read_akt", "title": "Read AKT kin output file", "topics": [ "read_akt" ] }, { "page": "read_fam", "title": "Read PLINK-formatted .fam file", "topics": [ "read_fam" ] }, { "page": "read_ibd", "title": "Read IBD segment file", "topics": [ "read_ibd" ] }, { "page": "read_ibis", "title": "Read IBIS coef output file", "topics": [ "read_ibis" ] }, { "page": "read_map", "title": "Read genetic map file", "topics": [ "read_map" ] }, { "page": "read_plink2_king", "title": "Read PLINK KING table", "topics": [ "read_plink2_king" ] } ], "_readme": "https://github.com/signaturescience/skater/raw/HEAD/README.md", "_rundeps": [ "bit", "bit64", "ca", "cli", "clipr", "cluster", "codetools", "colorspace", "corrr", "cpp11", "crayon", "dplyr", "evaluate", "farver", "foreach", "gclus", "generics", "ggplot2", "ggrepel", "glue", "gtable", "highr", "hms", "isoband", "iterators", "kinship2", "knitr", "labeling", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "mgcv", "nlme", "permute", "pillar", "pkgconfig", "prettyunits", "progress", "purrr", "qap", "quadprog", "R6", "RColorBrewer", "Rcpp", "readr", "registry", "rlang", "S7", "scales", "seriation", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "TSP", "tzdb", "utf8", "vctrs", "vegan", "viridisLite", "vroom", "withr", "xfun", "yaml" ], "_vignettes": [ { "source": "basic_usage.Rmd", "filename": "basic_usage.html", "title": "Basic Usage", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Pedigree parsing and manipulation", "Degree Inference", "Benchmarking Degree Classification", "IBD Segment Analysis" ], "created": "2021-07-19 13:50:44", "modified": "2021-12-27 17:54:11", "commits": 3 } ], "_score": 5.3979400086720375, "_indexed": false, "_nocasepkg": "skater", "_universes": [ "stephenturner" ], "_indexurl": "https://signaturescience.r-universe.dev/skater", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.0", "date": "2026-06-05T07:09:45.000Z", "distro": "noble", "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7", "fileid": "6043f0a4478d79c79c725733fc712d622c89693c0095c61704b16f87cff659fe", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27000687655" }, { "r": "4.6.0", "os": "linux", "version": "0.2.0", "date": "2026-06-05T07:09:41.000Z", "distro": "noble", "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7", "fileid": "f11758f5abe7892ace828e24f2e6e6ca7a0fde9f9f2c821ea138b90d6c811801", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27000687655" }, { "r": "4.5.3", "os": "mac", "version": "0.2.0", "date": "2026-06-05T07:09:04.000Z", "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7", "fileid": "5bfba8413f5fc60d94726c91812a806ffe9dd0fc386710242b356d5f598f1868", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27000687655" }, { "r": "4.6.0", "os": "mac", "version": "0.2.0", "date": "2026-06-05T07:09:51.000Z", "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7", "fileid": "69123521f478547c67ae0d1c2fc54ee76b8a5c762dcf382f6f6ef6d95308aa91", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27000687655" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.0", "date": "2026-06-05T07:09:45.000Z", "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7", "fileid": "71adeaca1e3ac6e869fd95cd0e3b8e770f17495299e215453b25d3935c98fdeb", "status": "success", "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27000687655" }, { "r": "4.7.0", "os": "win", "version": "0.2.0", "date": "2026-06-05T07:08:45.000Z", "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7", "fileid": "11108df1c6c71b5007bd62738ce91496915faff75aeb02c2bbc8597963df371e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27000687655" }, { "r": "4.5.3", "os": "win", "version": "0.2.0", "date": "2026-06-05T07:08:52.000Z", "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7", "fileid": "8ac9d6447d170c0c1c013a737e3db545af2b7b3e77bbecdbdf166efa750e77ef", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27000687655" }, { "r": "4.6.0", "os": "win", "version": "0.2.0", "date": "2026-06-05T07:08:42.000Z", "commit": "1eb38adcd959d2f3b16819a1e6145a85c0904cc7", "fileid": "2d9139358c4642f71bb52371b77149150d17d285da999f9b6a1cbcb49b24cdbe", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/27000687655" } ] }