{
  "_id": "6a588d45ff0138dec5d74efa",
  "Package": "rplanes",
  "Title": "Plausibility Analysis of Epidemiological Signals",
  "Version": "0.1.0",
  "Authors@R": "c(person(given = \"VP\",\nfamily = \"Nagraj\",\nrole = c(\"aut\", \"cre\"),\nemail = \"nagraj@nagraj.net\",\ncomment = c(ORCID = \"0000-0003-0060-566X\")),\nperson(given = \"Desiree\",\nfamily = \"Williams\",\nrole = \"aut\"),\nperson(given = \"Amy\",\nfamily = \"Benefield\",\nrole = \"aut\"))",
  "Description": "Provides functionality to prepare data and analyze\nplausibility of both forecasted and reported epidemiological\nsignals. The functions implement a set of plausibility\nalgorithms that are agnostic to geographic and time resolutions\nand are calculated independently then presented as a combined\nscore.",
  "License": "MIT + file LICENSE",
  "URL": "https://signaturescience.github.io/rplanes/",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "Config/pak/sysreqs": "libicu-dev libx11-dev",
  "Repository": "https://stephenturner.r-universe.dev",
  "Date/Publication": "2024-07-17 11:44:02 UTC",
  "RemoteUrl": "https://github.com/signaturescience/rplanes",
  "RemoteRef": "HEAD",
  "RemoteSha": "6e9fe6d51647680c92624d95d0d7922175bff113",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-16 07:46:55 UTC",
    "User": "root"
  },
  "Author": "VP Nagraj [aut, cre] (ORCID: <https://orcid.org/0000-0003-0060-566X>),\nDesiree Williams [aut],\nAmy Benefield [aut]",
  "Maintainer": "VP Nagraj <nagraj@nagraj.net>",
  "_user": "stephenturner",
  "_type": "src",
  "_file": "rplanes_0.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/f5570e21a8e69671ec57a318cfd5aada5efa8a88d2f863ae6d6121b85f8ac468",
  "_filesize": 2024582,
  "_sha256": "f5570e21a8e69671ec57a318cfd5aada5efa8a88d2f863ae6d6121b85f8ac468",
  "_expires": "2026-10-24T07:50:27.000Z",
  "_created": "2026-07-16T07:46:55.000Z",
  "_published": "2026-07-16T07:50:29.101Z",
  "_jobs": [
    {
      "job": 87564835186,
      "time": 165,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8368575546"
    },
    {
      "job": 87564835179,
      "time": 176,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8368579873"
    },
    {
      "job": 87564835188,
      "time": 98,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8368548576"
    },
    {
      "job": 87564835206,
      "time": 100,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8368549315"
    },
    {
      "job": 87564181861,
      "time": 207,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8368507551"
    },
    {
      "job": 87564835189,
      "time": 139,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8368564614"
    },
    {
      "job": 87564835215,
      "time": 104,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8368550479"
    },
    {
      "job": 87564835221,
      "time": 95,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8368547738"
    },
    {
      "job": 87564835204,
      "time": 112,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8368554334"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/stephenturner/actions/runs/29480881748",
  "_status": "success",
  "_upstream": "https://github.com/signaturescience/rplanes",
  "_commit": {
    "id": "6e9fe6d51647680c92624d95d0d7922175bff113",
    "author": "VP Nagraj <pnagraj@signaturescience.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #146 from signaturescience/dev\n\nv0.1.0",
    "time": 1721216642
  },
  "_maintainer": {
    "name": "VP Nagraj",
    "email": "nagraj@nagraj.net",
    "login": "vpnagraj",
    "description": "",
    "uuid": 8546787,
    "orcid": "0000-0003-0060-566X"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "dtw",
      "role": "Imports"
    },
    {
      "package": "ecp",
      "role": "Imports"
    },
    {
      "package": "lubridate",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "readr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "DT",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "MMWRweek",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "shiny",
      "role": "Suggests"
    },
    {
      "package": "shinyjs",
      "role": "Suggests"
    },
    {
      "package": "shinyWidgets",
      "role": "Suggests"
    },
    {
      "package": "shinycssloaders",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "tools",
      "role": "Suggests"
    }
  ],
  "_owner": "signaturescience",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 10,
  "_contributors": [
    {
      "user": "vpnagraj",
      "count": 259,
      "uuid": 8546787
    },
    {
      "user": "dwill023",
      "count": 60,
      "uuid": 38054440
    },
    {
      "user": "abenefield1",
      "count": 37,
      "uuid": 42815856
    },
    {
      "user": "stephenturner",
      "count": 9,
      "uuid": 460076
    }
  ],
  "_userbio": {
    "uuid": 460076,
    "type": "user",
    "name": "Stephen Turner",
    "followers": 938,
    "description": "Associate Professor at the University of Virginia School of Data Science."
  },
  "_downloads": {
    "count": 229,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rplanes"
  },
  "_devurl": "https://github.com/signaturescience/rplanes",
  "_pkgdown": "https://signaturescience.github.io/rplanes/",
  "_searchresults": 7,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/rplanes.html",
    "LICENSE",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/signaturescience/rplanes",
  "_realowner": "signaturescience",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2024-07-17"
    }
  ],
  "_exports": [
    "%>%",
    "%m-%",
    "is_forecast",
    "is_observed",
    "plane_cover",
    "plane_diff",
    "plane_repeat",
    "plane_score",
    "plane_seed",
    "plane_shape",
    "plane_taper",
    "plane_trend",
    "plane_zero",
    "read_forecast",
    "rplanes_explorer",
    "to_signal",
    "valid_dates"
  ],
  "_help": [
    {
      "page": "check_incomplete",
      "title": "Check completeness of seed and signal data",
      "topics": [
        "check_incomplete"
      ]
    },
    {
      "page": "create_sliding_windows_df",
      "title": "Sliding windows",
      "topics": [
        "create_sliding_windows_df"
      ]
    },
    {
      "page": "cutter",
      "title": "Cut into categorical differences",
      "topics": [
        "cutter"
      ]
    },
    {
      "page": "epiweek_start",
      "title": "Epiweek start",
      "topics": [
        "epiweek_start"
      ]
    },
    {
      "page": "get_shapes",
      "title": "Determine shapes",
      "topics": [
        "get_shapes"
      ]
    },
    {
      "page": "is_forecast",
      "title": "Check forecast",
      "topics": [
        "is_forecast"
      ]
    },
    {
      "page": "is_observed",
      "title": "Check observed",
      "topics": [
        "is_observed"
      ]
    },
    {
      "page": "month_start",
      "title": "Month start",
      "topics": [
        "month_start"
      ]
    },
    {
      "page": "plane_cover",
      "title": "Coverage component",
      "topics": [
        "plane_cover"
      ]
    },
    {
      "page": "plane_diff",
      "title": "Difference component",
      "topics": [
        "plane_diff"
      ]
    },
    {
      "page": "plane_repeat",
      "title": "Repeat component",
      "topics": [
        "plane_repeat"
      ]
    },
    {
      "page": "plane_score",
      "title": "Score PLANES components",
      "topics": [
        "plane_score"
      ]
    },
    {
      "page": "plane_seed",
      "title": "Create seed",
      "topics": [
        "plane_seed"
      ]
    },
    {
      "page": "plane_shape",
      "title": "Shape component",
      "topics": [
        "plane_shape"
      ]
    },
    {
      "page": "plane_taper",
      "title": "Taper component",
      "topics": [
        "plane_taper"
      ]
    },
    {
      "page": "plane_trend",
      "title": "Trend component",
      "topics": [
        "plane_trend"
      ]
    },
    {
      "page": "plane_zero",
      "title": "Zero component",
      "topics": [
        "plane_zero"
      ]
    },
    {
      "page": "q_boundary",
      "title": "Quantile boundary",
      "topics": [
        "q_boundary"
      ]
    },
    {
      "page": "read_forecast",
      "title": "Read in forecast file",
      "topics": [
        "read_forecast"
      ]
    },
    {
      "page": "resolve_resolution",
      "title": "Resolve resolution",
      "topics": [
        "resolve_resolution"
      ]
    },
    {
      "page": "rplanes_explorer",
      "title": "'rplanes' explorer app launcher",
      "topics": [
        "rplanes_explorer"
      ]
    },
    {
      "page": "seed_engine",
      "title": "Seed engine",
      "topics": [
        "seed_engine"
      ]
    },
    {
      "page": "to_chunk",
      "title": "Chunk a vector",
      "topics": [
        "to_chunk"
      ]
    },
    {
      "page": "to_signal",
      "title": "Create signal object",
      "topics": [
        "to_signal"
      ]
    },
    {
      "page": "valid_dates",
      "title": "Validate dates",
      "topics": [
        "valid_dates"
      ]
    },
    {
      "page": "valid_location",
      "title": "Validate location",
      "topics": [
        "valid_location"
      ]
    }
  ],
  "_pkglogo": "https://github.com/signaturescience/rplanes/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/signaturescience/rplanes/raw/HEAD/README.md",
  "_rundeps": [
    "bit",
    "bit64",
    "cli",
    "clipr",
    "cpp11",
    "crayon",
    "dplyr",
    "dtw",
    "ecp",
    "generics",
    "glue",
    "hms",
    "lifecycle",
    "lubridate",
    "magrittr",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "proxy",
    "purrr",
    "R6",
    "Rcpp",
    "readr",
    "rlang",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "tzdb",
    "utf8",
    "vctrs",
    "vroom",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "basic-usage.Rmd",
      "filename": "basic-usage.html",
      "title": "Basic Usage",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Analyzing plausibility of forecast data",
        "Prepare observed data",
        "Convert observed data into a signal with to_signal()",
        "Create a seed from the observed data via plane_seed()",
        "Prepare forecast data",
        "Convert forecast data into a signal with to_signal()",
        "Run plane_score() and visualize results",
        "Analyzing plausibility of observed data"
      ],
      "created": "2023-10-25 15:51:27",
      "modified": "2024-07-17 11:44:02",
      "commits": 4
    },
    {
      "source": "planes-components.Rmd",
      "filename": "planes-components.html",
      "title": "PLANES Components",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Data preparation",
        "Difference - plane_diff()",
        "Flagged as implausible",
        "Not flagged as implausible",
        "Coverage - plane_cover()",
        "Taper - plane_taper()",
        "Repeat - plane_repeat()",
        "Controlling sensitivity with parameters",
        "Trend - plane_trend()",
        "Shape - plane_shape()",
        "Zero - plane_zero()"
      ],
      "created": "2023-12-20 17:15:17",
      "modified": "2024-07-17 11:44:02",
      "commits": 2
    },
    {
      "source": "interpretation.Rmd",
      "filename": "interpretation.html",
      "title": "PLANES Interpretation",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Weighting scheme within plane_score()",
        "Motivations for weighting",
        "Limitations that arise from seed data",
        "Reliability of seed data",
        "Length of seed data",
        "What to do when a flag is raised",
        "Summary"
      ],
      "created": "2024-07-17 11:44:02",
      "modified": "2024-07-17 11:44:02",
      "commits": 1
    },
    {
      "source": "rplanes-explorer.Rmd",
      "filename": "rplanes-explorer.html",
      "title": "rplanes Explorer",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Analysis steps",
        "Example data",
        "Usage",
        "Inputs and outputs",
        "Launching the app"
      ],
      "created": "2023-12-20 17:15:17",
      "modified": "2023-12-20 17:15:17",
      "commits": 1
    }
  ],
  "_score": 5.778151250383644,
  "_indexed": false,
  "_nocasepkg": "rplanes",
  "_universes": [
    "stephenturner"
  ],
  "_indexurl": "https://signaturescience.r-universe.dev/rplanes",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-07-16T07:49:22.000Z",
      "distro": "resolute",
      "commit": "6e9fe6d51647680c92624d95d0d7922175bff113",
      "fileid": "https://r2.ropensci.org/da9f52e12ff9a8ce54360d0944b61bfbe0289ab95d57b40bcbd8bd9718419f95",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/29480881748"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-07-16T07:49:33.000Z",
      "distro": "resolute",
      "commit": "6e9fe6d51647680c92624d95d0d7922175bff113",
      "fileid": "https://r2.ropensci.org/e832e6a510f9a70be7953e1de0915c992b8961fd0ecb6fbe0db9c228788aa4f9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/29480881748"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-07-16T07:48:26.000Z",
      "commit": "6e9fe6d51647680c92624d95d0d7922175bff113",
      "fileid": "https://r2.ropensci.org/2b0aa0746f90b23cdd237dfaf4cc2c35c4107392aaa443f788512bb727a0dbcb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/29480881748"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-07-16T07:48:24.000Z",
      "commit": "6e9fe6d51647680c92624d95d0d7922175bff113",
      "fileid": "https://r2.ropensci.org/4da905878d0e2718023361bd925dc8512df206882499b0eef2ee5df27be58667",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/29480881748"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-07-16T07:49:27.000Z",
      "commit": "6e9fe6d51647680c92624d95d0d7922175bff113",
      "fileid": "https://r2.ropensci.org/14b922eb8b04867c564b94de8a93d16f5b8d9c0de20aae673eef7a34fe6a64b6",
      "status": "success",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/29480881748"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-07-16T07:48:10.000Z",
      "commit": "6e9fe6d51647680c92624d95d0d7922175bff113",
      "fileid": "https://r2.ropensci.org/88d65fa4e28f6a0cae37d5ed62ec056f24012cc6aa911e1239b64beea92cf721",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/29480881748"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-07-16T07:48:08.000Z",
      "commit": "6e9fe6d51647680c92624d95d0d7922175bff113",
      "fileid": "https://r2.ropensci.org/52523924f4820c7b278e8b5271181ec9bfcf3fa5a29097faf53749e9ae768cd9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/29480881748"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-07-16T07:48:18.000Z",
      "commit": "6e9fe6d51647680c92624d95d0d7922175bff113",
      "fileid": "https://r2.ropensci.org/d1a777a5b035e044091603a96196649b273afc565def204ad4049be5fa246dc1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/stephenturner/actions/runs/29480881748"
    }
  ]
}